STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK60217.1Uncharacterized membrane protein. (170 aa)    
Predicted Functional Partners:
SEK60280.1
Putative membrane protein.
 
     0.956
SEK22840.1
Coproporphyrinogen oxidase.
    
 0.866
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.827
SEK60183.1
Uncharacterized membrane protein.
  
     0.775
SEK60148.1
Cytochrome c oxidase subunit 2.
 
     0.750
SEK60115.1
Cytochrome c oxidase subunit I+III; Belongs to the heme-copper respiratory oxidase family.
  
     0.591
SEK60318.1
Gluconate 2-dehydrogenase gamma chain.
       0.493
SEK60357.1
Gluconate 2-dehydrogenase alpha chain.
       0.467
SEK60388.1
Cytochrome c, mono-and diheme variants.
       0.467
SEK60428.1
Hypothetical protein.
       0.458
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.