STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK70151.1Flp pilus assembly protein TadD, contains TPR repeats. (281 aa)    
Predicted Functional Partners:
SEK70116.1
Prepilin peptidase CpaA.
 
   
 0.964
SEK70272.1
Tight adherence protein B.
 
  
 0.950
SEK70195.1
Tetratricopeptide repeat-containing protein.
 
     0.946
SEK70348.1
Pilus assembly protein CpaE.
 
  
 0.946
SEK70076.1
Hypothetical protein.
 
     0.930
SEK70233.1
Tight adherence protein C.
 
  
 0.929
SEK70452.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.867
SEK70490.1
Pilus assembly protein CpaB.
 
  
 0.845
SEK70308.1
Pilus assembly protein CpaF.
 
  
 0.794
SEK70391.1
OmpA family protein.
 
     0.785
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.