STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK95705.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (208 aa)    
Predicted Functional Partners:
SEK95740.1
Hypothetical protein.
       0.837
SEK39957.1
Glutamate synthase (NADPH) large subunit.
     
 0.827
SEK95649.1
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
    0.776
modC
Molybdate transport system ATP-binding protein; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family.
       0.773
SEK95682.1
Molybdate transport system substrate-binding protein.
       0.773
SEK89582.1
Reductive dehalogenase.
   
 0.641
SEK45900.1
Choline-sulfatase.
   
   0.612
SEK95775.1
Glutathione peroxidase.
  
   0.572
SEK95810.1
Acetoin utilization protein AcuC.
   
   0.566
SEL27454.1
[acyl-carrier-protein] S-malonyltransferase.
  
  0.507
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.