STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK95810.1Acetoin utilization protein AcuC. (376 aa)    
Predicted Functional Partners:
SEL47946.1
SNF2 family N-terminal domain-containing protein.
  
 
 0.990
SEK33509.1
Monoamine oxidase.
    
 0.973
SEK26471.1
ATPase family associated with various cellular activities (AAA).
   
 0.858
SEK95775.1
Glutathione peroxidase.
       0.773
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 0.751
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.670
SEK53074.1
Hypothetical protein.
    
 0.637
SEK33440.1
Putative intracellular protease/amidase.
    
  0.634
SEK53041.1
Putative lumazine-binding.
    
  0.634
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.594
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.