STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK96370.1Permease of the drug/metabolite transporter (DMT) superfamily. (303 aa)    
Predicted Functional Partners:
SEK96402.1
Threonine/homoserine/homoserine lactone efflux protein.
 
     0.852
SEK96303.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
     0.831
SEK96197.1
Altronate hydrolase.
       0.773
SEK96230.1
Predicted dehydrogenase.
       0.773
SEK96265.1
Shikimate dehydrogenase.
       0.773
SEK96336.1
2-hydroxy-3-oxopropionate reductase.
       0.773
SEK96119.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.738
SEK96164.1
TRAP transporter, DctM subunit.
 
     0.707
SEK96080.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
     0.517
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.