STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL00606.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SEK47380.1
Cytochrome c peroxidase.
  
 
 0.952
SEK62529.1
Cytochrome c peroxidase; Manually curated.
  
 
 0.952
SEL14453.1
Plastocyanin.
   
   0.943
SEL31231.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.934
SEK47290.1
Cytochrome c.
  
 0.933
SEK60388.1
Cytochrome c, mono-and diheme variants.
  
 0.933
SEK60581.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
 0.933
SEL65818.1
Cytochrome c, mono-and diheme variants.
  
 0.933
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.908
SEK39957.1
Glutamate synthase (NADPH) large subunit.
    
  0.883
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.