STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL12907.1Polymer-forming protein. (181 aa)    
Predicted Functional Partners:
SEL12944.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
   
 0.923
SEL12874.1
UDP:flavonoid glycosyltransferase YjiC, YdhE family.
       0.773
SEL13025.1
Peroxiredoxin Q/BCP.
 
   
 0.754
SEL12991.1
Uncharacterized conserved protein, contains ferritin-like DUF455 domain.
       0.690
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
   
    0.551
SEL55090.1
Hypothetical protein.
  
     0.533
SEL13060.1
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains.
       0.527
SEK59514.1
Chromosome partitioning protein.
 
     0.507
SEL56380.1
Rod shape-determining protein MreC.
 
     0.498
SEK96988.1
Hypothetical protein.
  
     0.489
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.