STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL13060.1Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains. (1106 aa)    
Predicted Functional Partners:
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.781
SEL12991.1
Uncharacterized conserved protein, contains ferritin-like DUF455 domain.
       0.700
SEL13025.1
Peroxiredoxin Q/BCP.
       0.700
SEK23186.1
Hypothetical protein.
  
     0.691
SEL24207.1
Hypothetical protein; Manually curated.
  
     0.690
SEK68067.1
Hypothetical protein.
  
     0.687
SEK58775.1
Rhomboid family protein.
 
     0.684
SEK98602.1
Hypothetical protein.
  
     0.649
SEK75620.1
Hypothetical protein.
  
     0.633
SEL16612.1
Periplasmic chaperone for outer membrane proteins SurA.
  
     0.601
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.