STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL19100.1Diguanylate cyclase (GGDEF) domain-containing protein. (339 aa)    
Predicted Functional Partners:
SEL65789.1
Diguanylate phosphodiesterase.
 
 0.996
SEL53768.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.992
SEL19056.1
Haem-NO-binding.
 
  
 0.980
SEK49490.1
Hypothetical protein.
 0.943
SEK23463.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.935
SEL41489.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.932
SEK93818.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
 0.920
SEK72822.1
Diguanylate cyclase/phosphodiesterase.
 0.903
SEK27304.1
Flagellin C-terminal helical region.
   
 
 0.876
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
    0.853
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.