STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL34139.1D-lactate dehydrogenase (cytochrome). (457 aa)    
Predicted Functional Partners:
SEL71394.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
   0.866
SEK21881.1
L-lactate dehydrogenase (cytochrome).
 
  0.816
SEL70750.1
L-lactate dehydrogenase (cytochrome).
 
  0.816
SEK40933.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.778
SEL58537.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.778
SEL52630.1
Glycolate oxidase iron-sulfur subunit.
 
 0.760
SEL26359.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.759
pdhA
Pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
    
 0.750
SEK39957.1
Glutamate synthase (NADPH) large subunit.
   
 0.746
SEK65407.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.734
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.