STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL41851.1ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase. (593 aa)    
Predicted Functional Partners:
SEK47265.1
Copper chaperone.
 
 
 0.752
SEL01612.1
Copper chaperone CopZ.
  
 
 0.716
SEK91442.1
DNA-3-methyladenine glycosylase II.
    
 
 0.431
SEK37279.1
Uncharacterized conserved protein, LabA/DUF88 family.
      
 0.400
SEK91408.1
Phospholipase/carboxylesterase.
      
 0.400
SEK91630.1
Predicted arabinose efflux permease, MFS family.
      
 0.400
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.