STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL42338.1TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (361 aa)    
Predicted Functional Partners:
SEL42270.1
TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.856
SEL42307.1
Tripartite ATP-independent transporter, DctQ component.
 
    0.814
SEL15781.1
TRAP transporter, DctM subunit.
 
    0.777
SEK96164.1
TRAP transporter, DctM subunit.
 
    0.742
SEK55737.1
TRAP transporter, DctM subunit.
 
    0.716
SEL15744.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.647
SEK55705.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.607
SEL48734.1
TRAP transporter, DctM subunit.
  
     0.562
SEL15713.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.515
SEK55671.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.479
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.