STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL42444.1Hypothetical protein. (596 aa)    
Predicted Functional Partners:
SEK33366.1
DNA translocase FtsK.
    
 
 0.903
SEK36454.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
   
   0.581
SEL26817.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.558
SEK94480.1
Hint domain-containing protein.
   
 0.521
SEL42997.1
Hypothetical protein.
   
 0.521
SEK90409.1
Acyl carrier protein.
   
   0.519
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
   0.519
SEK66410.1
Hemolysin-type calcium-binding repeat-containing protein.
 
  0.499
SEK58550.1
Pectate lyase superfamily protein.
   
  0.490
SEL42420.1
Two-component system, NarL family, sensor kinase.
       0.482
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.