STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL42877.1Tripartite-type tricarboxylate transporter, receptor component TctC. (340 aa)    
Predicted Functional Partners:
SEL42810.1
Putative tricarboxylic transport membrane protein.
 
    0.926
SEL42745.1
Xylose isomerase-like TIM barrel.
 
     0.836
SEL64242.1
Putative tricarboxylic transport membrane protein.
 
    0.820
SEL43405.1
Putative tricarboxylic transport membrane protein.
 
    0.818
SEL52230.1
Putative tricarboxylic transport membrane protein.
 
    0.817
SEL42777.1
Transcriptional regulator, TetR family.
 
     0.725
SEK97796.1
TctA family transporter.
 
    0.701
SEL42643.1
Sugar phosphate isomerase/epimerase.
 
     0.680
SEL52164.1
Putative tricarboxylic transport membrane protein.
  
     0.680
SEL42709.1
Predicted dehydrogenase.
 
     0.614
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.