STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL45725.1Polyhydroxybutyrate depolymerase. (286 aa)    
Predicted Functional Partners:
SEL45692.1
Rhodanese-related sulfurtransferase.
 
     0.891
SEL45827.1
Hypothetical protein.
  
     0.774
SEL45856.1
Hypothetical protein.
  
     0.773
SEL45934.1
Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family.
  
     0.771
SEL46039.1
Uncharacterized conserved protein, DUF302 family.
  
     0.771
SEL16401.1
Hypothetical protein.
  
     0.703
SEL45756.1
Membrane glycosyltransferase.
 
     0.662
SEK42174.1
Hypothetical protein.
  
     0.532
SEL45655.1
Chemotaxis protein CheD; Manually curated.
       0.525
SEL45795.1
Glucans biosynthesis protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).
 
     0.494
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.