STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL48000.1Helix-turn-helix domain-containing protein. (66 aa)    
Predicted Functional Partners:
SEL46485.1
Hypothetical protein.
 
     0.772
SEK39957.1
Glutamate synthase (NADPH) large subunit.
    
  0.760
SEL46710.1
Hypothetical protein.
 
     0.744
SEL46771.1
Hypothetical protein.
 
     0.741
SEL46544.1
AAA domain-containing protein.
 
     0.732
SEL46830.1
Hypothetical protein.
  
     0.725
SEL46572.1
Hypothetical protein.
 
     0.714
SEL46213.1
Protein of unknown function.
  
     0.646
SEL46152.1
Hypothetical protein.
  
    0.592
SEL46604.1
Helicase conserved C-terminal domain-containing protein.
 
     0.585
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.