STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL56586.1ATP-binding cassette, subfamily B. (593 aa)    
Predicted Functional Partners:
SEL10966.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.899
potA
Putative spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
     
0.806
SEK88234.1
ATP-binding cassette, subfamily B.
  
 
0.803
SEK45406.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
 
0.762
SEK26471.1
ATPase family associated with various cellular activities (AAA).
   
 0.720
SEK46392.1
Capsular polysaccharide transport system ATP-binding protein.
   
 0.660
SEK47827.1
ABC-2 type transport system ATP-binding protein.
 
 
0.660
SEL72030.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
     
0.628
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
  
 0.615
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.556
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.