STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL65147.1Two-component system, cell cycle response regulator CtrA. (236 aa)    
Predicted Functional Partners:
SEL41489.1
PAS/PAC sensor hybrid histidine kinase.
 0.990
SEK92435.1
Histidine phosphotransferase ChpT.
  
 0.947
SEL71394.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
 
 0.913
SEK49490.1
Hypothetical protein.
 0.908
SEL11260.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.897
SEK89851.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.849
SEK97913.1
Two-component system, OmpR family, sensor histidine kinase TctE.
 
 0.845
SEK93601.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 0.840
SEL30538.1
Signal transduction histidine kinase.
 
  0.807
SEL29420.1
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ.
  
  0.765
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.