STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL66763.1Transcriptional regulator, LysR family; Manually curated; Belongs to the LysR transcriptional regulatory family. (332 aa)    
Predicted Functional Partners:
SEL81668.1
Hypothetical protein.
  
     0.740
SEL46004.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.733
SEL66885.1
Uncharacterized conserved protein, DUF736 family.
  
     0.700
SEL66795.1
Hypothetical protein.
  
     0.699
SEL81638.1
Type IV secretion system protein VirD4.
  
     0.686
SEL66915.1
Hypothetical protein.
  
     0.650
SEL66950.1
Protein of unknown function.
  
     0.595
SEL14523.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.587
SEK39957.1
Glutamate synthase (NADPH) large subunit.
     
 0.496
SEL64353.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.454
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.