STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL69551.1Capsular exopolysaccharide family. (655 aa)    
Predicted Functional Partners:
SEK38650.1
Polysaccharide export outer membrane protein.
 
 0.996
SEL69382.1
Polysaccharide biosynthesis/export protein.
 
 0.994
SEK25466.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
 0.991
SEK24675.1
Polysaccharide export outer membrane protein.
  
 0.989
SEK34935.1
Polysaccharide biosynthesis protein.
  
 
 0.966
SEK38688.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.964
SEL69355.1
Exopolysaccharide production protein ExoY.
 
 
 0.964
SEK34373.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.958
SEK31975.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.941
SEL69611.1
Succinoglycan biosynthesis protein ExoA.
 
  
 0.923
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.