STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL70100.1D-threo-aldose 1-dehydrogenase. (341 aa)    
Predicted Functional Partners:
SEK46526.1
L-fuconolactonase.
  
 0.981
SEL69954.1
L-fucose mutarotase; Belongs to the RbsD / FucU family.
 
     0.809
SEL63140.1
Fructokinase.
    
  0.784
SEL70069.1
Glycine hydroxymethyltransferase.
  
    0.775
SEK34213.1
UDP-glucose dehydrogenase.
   
 
  0.743
rbsK
6-phosphofructokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
  0.680
SEK26813.1
Hypothetical protein.
    
 
 0.599
SEK97180.1
L-glyceraldehyde 3-phosphate reductase.
  
     0.540
SEL70040.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.540
SEL69982.1
Lysophospholipase L1.
       0.492
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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