STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL75196.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
SEL75167.1
Type IV secretion system T-DNA border endonuclease VirD2.
 
     0.951
SEL75139.1
Type IV secretion system protein VirD4.
 
     0.947
SEL77635.1
Type IV secretion system protein VirB2.
  
     0.775
SEL78002.1
Type IV secretion system protein VirB6.
  
     0.775
SEL77664.1
Type IV secretion system protein VirB3.
  
     0.774
SEL77787.1
Type IV secretion system protein VirB5.
  
     0.774
SEL77587.1
Hypothetical protein.
  
     0.772
SEL77560.1
Hypothetical protein.
  
     0.769
SEL77818.1
Type IV secretion system protein VirB8.
  
     0.769
SEL77696.1
Type IV secretion system protein VirB4.
  
     0.764
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.