STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL77587.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SEL77635.1
Type IV secretion system protein VirB2.
 
     0.927
SEL77664.1
Type IV secretion system protein VirB3.
 
     0.916
SEL77696.1
Type IV secretion system protein VirB4.
 
     0.910
SEL77787.1
Type IV secretion system protein VirB5.
 
     0.910
SEL77560.1
Hypothetical protein.
 
     0.908
SEL77757.1
Transglycosylase SLT domain-containing protein.
 
     0.904
SEL77818.1
Type IV secretion system protein VirB8.
 
     0.899
SEL77877.1
Type IV secretion system protein VirB10.
 
     0.899
SEL78002.1
Type IV secretion system protein VirB6.
 
     0.899
SEL77848.1
Type IV secretion system protein VirB9.
 
     0.890
Your Current Organism:
Jannaschia helgolandensis
NCBI taxonomy Id: 188906
Other names: DSM 14858, J. helgolandensis, Jannaschia helgolandensis Wagner-Dobler et al. 2003, NCIMB 13941, strain Hel 10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.