Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORV53226.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)    
Predicted Functional Partners:
ORV53227.1
decaprenylphosphoryl-beta-D-ribose oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
ORV53228.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
ORV53229.1
Arabinofuranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
ORV53230.1
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
Your Current Organism:
Mycolicibacter engbaekii
NCBI taxonomy Id: 188915
Other names: ATCC 27353, DSM 45694, M. engbaekii, Mycobacterium engbaekii, Mycobacterium engbaekii Tortoli et al. 2013, Mycolicibacter engbaekii (Tortoli et al. 2013) Gupta et al. 2018
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