STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97102.1Hypothetical protein. (224 aa)    
Predicted Functional Partners:
AMP97103.1
Pfam:pfam13858 Protein of unknown function (DUF4199).
       0.851
AMP97101.1
Dihydroorotase; Pfam:pfam13147 Amidohydrolase.
       0.840
AMP97100.1
Hypothetical protein; Pfam:pfam07584 Aerotolerance regulator N-terminal.
       0.835
AMP97104.1
Pfam:pfam00535 Glycosyl transferase family 2.
       0.686
AMP97105.1
Pfam:pfam00535 Glycosyl transferase family 2.
       0.686
AMP97106.1
Hypothetical protein.
       0.686
AMP97107.1
Pfam:pfam03321 GH3 auxin-responsive promoter.
       0.682
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.678
AMP97109.1
Peptidase; Pfam:pfam02163 Peptidase family M50.
       0.639
AMP97110.1
Molecular chaperone Hsc20; Pfam:pfam00226 DnaJ domain.
       0.537
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.