STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97302.1Pfam:pfam02321 Outer membrane efflux protein. (469 aa)    
Predicted Functional Partners:
AMP97303.1
Acriflavin resistance protein; Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.981
AMP97947.1
Pfam:pfam02321 Outer membrane efflux protein.
  
  
  0.947
AMP97498.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
  
  
  0.915
AMP98473.1
Pfam:pfam02321 Outer membrane efflux protein.
  
  
 
0.913
AMQ00433.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
  
  
 
0.913
AMQ01538.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
  
  
 
0.908
AMP97779.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
     
  0.900
AMP99510.1
Pfam:pfam02321 Outer membrane efflux protein.
     
  0.900
AMQ01102.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
     
 
0.900
AMP97304.1
RND transporter; Pfam:pfam00873 AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.874
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.