STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97500.1Transporter; Pfam:pfam07690 Major Facilitator Superfamily. (531 aa)    
Predicted Functional Partners:
AMP97499.1
Multidrug transporter; Pfam:pfam00529 HlyD family secretion protein.
 
   0.970
AMP97498.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
 
    0.965
AMP97497.1
AraC family transcriptional regulator; Pfam:pfam12833 Helix-turn-helix domain.
 
     0.890
AMP97945.1
Multidrug transporter; Pfam:pfam00529 HlyD family secretion protein.
 
   0.770
AMQ01101.1
Pfam:pfam00529 HlyD family secretion protein.
 
   0.770
AMP99612.1
Hypothetical protein; Belongs to the major facilitator superfamily.
  
     0.654
AMP99584.1
Hypothetical protein; Pfam:pfam07690 Major Facilitator Superfamily.
  
    0.400
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.