Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMP97749.1Hypothetical protein; Pfam:pfam00440 Bacterial regulatory proteins, tetR family. (205 aa)    
Predicted Functional Partners:
AMQ01881.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.633
AMP97748.1
Pfam:pfam12844 Helix-turn-helix domain.
       0.475
AMP97750.1
2-amino-3-ketobutyrate CoA ligase; Pfam:pfam00155 Aminotransferase class I and II.
       0.434
AMP97753.1
CDP-alcohol phosphatidyltransferase.
 
     0.429
AMP97751.1
UDP-glucose 4-epimerase; Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
 
     0.401
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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