STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97845.1Deacetylase; Pfam:pfam00850 Histone deacetylase domain. (302 aa)    
Predicted Functional Partners:
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.855
AMP97844.1
Membrane protein; Pfam:pfam01062 Bestrophin, RFP-TM, chloride channel.
       0.855
AMQ01011.1
Molecular chaperone Hsp90; Pfam:pfam00183 Hsp90 protein.
   
 0.832
AMP97090.1
Hypothetical protein; Pfam:pfam00400 WD domain, G-beta repeat.
    
 0.722
AMQ00009.1
Hypothetical protein.
    
 0.722
AMP97339.1
Uridine kinase; Pfam:pfam00485 Phosphoribulokinase / Uridine kinase family.
   
 0.707
AMP97681.1
SNF2-related protein; Pfam:pfam00176 SNF2 family N-terminal domain.
    
 0.695
AMP98700.1
Hypothetical protein.
    
 0.695
AMQ01209.1
Pfam:pfam00176 SNF2 family N-terminal domain.
    
 0.695
AMP97846.1
Pfam:pfam01131 DNA topoisomerase.
   
   0.655
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.