STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97941.13-oxoacyl-[acyl-carrier-protein] reductase; Pfam:pfam00106 short chain dehydrogenase. (263 aa)    
Predicted Functional Partners:
AMP97940.1
TetR family transcriptional regulator.
 
     0.695
AMP99117.1
Nonribosomal peptide synthetase; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.655
AMP99734.1
Nonribosomal peptide synthetase; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.655
AMP99737.1
Nonribosomal peptide synthetase; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.655
AMP97960.1
Non-ribosomal peptide synthase; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.627
AMP99653.1
Hypothetical protein; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.625
AMP97965.1
Amino acid adenylation protein; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.531
AMP99651.1
Hypothetical protein; Pfam:pfam00668 Condensation domain.
  
 
 0.531
AMP97936.1
Short-chain dehydrogenase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
  
     0.529
AMP99047.1
Non-ribosomal peptide synthetase; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.514
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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