Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMP97998.1Pfam:pfam02837 Glycosyl hydrolases family 2, sugar binding domain. (1086 aa)    
Predicted Functional Partners:
AMP97999.1
Hypothetical protein; Pfam:pfam01979 Amidohydrolase family.
       0.773
AMP98993.1
Sugar:proton symporter; Pfam:pfam06379 L-rhamnose-proton symport protein (RhaT).
 
     0.725
AMP98989.1
Alpha-rhamnosidase; Pfam:pfam05592 Bacterial alpha-L-rhamnosidase.
 
   
 0.644
AMP98546.1
Hypothetical protein; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
  
     0.561
AMP98986.1
Alpha-L-rhamnosidase; Pfam:pfam05592 Bacterial alpha-L-rhamnosidase.
 
   
 0.546
AMP97997.1
Putative glycosyltransferase.
       0.520
AMP98108.1
Pfam:pfam02836 Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
    0.518
AMP97046.1
Pfam:pfam00188 Cysteine-rich secretory protein family.
  
    0.502
AMP98109.1
Pfam:pfam05426 Alginate lyase.
  
     0.497
AMP98547.1
Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.492
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.