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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP97998.1Pfam:pfam02837 Glycosyl hydrolases family 2, sugar binding domain. (1086 aa)    
Predicted Functional Partners:
AMP97999.1
Hypothetical protein; Pfam:pfam01979 Amidohydrolase family.
       0.773
AMP98993.1
Sugar:proton symporter; Pfam:pfam06379 L-rhamnose-proton symport protein (RhaT).
 
     0.720
AMP98989.1
Alpha-rhamnosidase; Pfam:pfam05592 Bacterial alpha-L-rhamnosidase.
 
     0.631
AMP98546.1
Hypothetical protein; Pfam:pfam06439 Domain of Unknown Function (DUF1080).
  
    0.561
AMP98986.1
Alpha-L-rhamnosidase; Pfam:pfam05592 Bacterial alpha-L-rhamnosidase.
 
     0.530
AMP97997.1
Putative glycosyltransferase.
       0.520
AMP98108.1
Pfam:pfam02836 Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
    0.520
AMP97577.1
Six-hairpin glycosidase; Pfam:pfam07944 Putative glycosyl hydrolase of unknown function (DUF1680).
 
    0.508
AMP98109.1
Pfam:pfam05426 Alginate lyase.
  
     0.497
AMP97046.1
Pfam:pfam00188 Cysteine-rich secretory protein family.
  
    0.494
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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