STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP98037.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
AMP98038.1
Hypothetical protein.
       0.651
AMP99542.1
Starch-binding protein; Pfam:pfam07980 SusD family.
  
   0.570
AMP99975.1
Hypothetical protein.
  
     0.532
AMP98993.1
Sugar:proton symporter; Pfam:pfam06379 L-rhamnose-proton symport protein (RhaT).
 
     0.516
AMP97046.1
Pfam:pfam00188 Cysteine-rich secretory protein family.
  
    0.494
AMQ01405.1
Hypothetical protein.
 
  
 0.490
AMQ00998.1
Flavodoxin; Pfam:pfam02525 Flavodoxin-like fold.
  
     0.453
AMP99543.1
Collagen-binding protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
  
     0.439
AMP98765.1
Hypothetical protein.
  
   0.430
AMP98547.1
Oxidoreductase; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.427
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.