STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP98177.1Type IV secretion protein; Pfam:pfam04717 Phage-related baseplate assembly protein. (599 aa)    
Predicted Functional Partners:
AMP97455.1
Hypothetical protein.
 
  
 0.876
AMP97447.1
Pfam:pfam06996 Protein of unknown function (DUF1305).
 
  
 0.872
AMP97448.1
Hypothetical protein.
 
  
 0.812
AMP97445.1
Hypothetical protein.
 
  
 0.807
AMP97449.1
GPW/gp25 family protein; Pfam:pfam04965 Gene 25-like lysozyme.
 
  
 0.797
AMP97456.1
Pfam:pfam05943 Protein of unknown function (DUF877).
 
   
 0.783
AMQ01865.1
Hypothetical protein.
 
    0.778
AMP97458.1
Hypothetical protein.
 
    0.774
AMP97459.1
Hypothetical protein.
 
    0.774
AMP97460.1
Hypothetical protein.
 
    0.774
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.