STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP98191.1Ubiquinone biosynthesis monooxygenase UbiB; Pfam:pfam03109 ABC1 family. (542 aa)    
Predicted Functional Partners:
AMP97965.1
Amino acid adenylation protein; Pfam:pfam00501 AMP-binding enzyme.
  
 
 0.465
AMP99651.1
Hypothetical protein; Pfam:pfam00668 Condensation domain.
  
 
 0.465
AMP98190.1
Hypothetical protein.
       0.454
AMP98189.1
2-polyprenyl-6-methoxyphenol hydroxylase.
  
 
 0.450
AMP97815.1
Glycosyltransferase.
  
 
 0.406
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.