Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AMP99040.1Hypothetical protein; Pfam:pfam01103 Surface antigen. (451 aa)    
Predicted Functional Partners:
AMP98198.1
Thioesterase.
  
     0.676
AMP99547.1
Pfam:pfam07748 Glycosyl hydrolases family 38 C-terminal domain.
  
     0.669
AMP98826.1
Hypothetical protein.
  
     0.641
AMQ00186.1
Lipoprotein; Pfam:pfam13525 Outer membrane lipoprotein.
  
 
 0.575
AMP97144.1
Hypothetical protein; Pfam:pfam00668 Condensation domain.
  
     0.569
AMQ01497.1
Hypothetical protein; Pfam:pfam13585 C-terminal domain of CHU protein family.
  
     0.539
AMP97135.1
Hypothetical protein.
  
     0.537
AMP97621.1
Hypothetical protein.
  
     0.535
AMP97109.1
Peptidase; Pfam:pfam02163 Peptidase family M50.
  
  
 0.528
AMQ00703.1
Hypothetical protein; Pfam:pfam01103 Surface antigen.
  
     0.524
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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