STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMP99797.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
AMP99798.1
Hypothetical protein.
       0.855
AMP99799.1
Hypothetical protein; Pfam:pfam09140 ATPase MipZ.
       0.855
AMP99796.1
Plasmid transfer protein; Pfam:pfam13572 Domain of unknown function (DUF4134).
       0.798
AMP99795.1
Conjugative transposon protein TraE; Pfam:pfam13572 Domain of unknown function (DUF4134).
       0.675
AMP99794.1
Plasmid transfer protein.
       0.674
AMP99790.1
Hypothetical protein.
       0.672
AMP99791.1
Hypothetical protein.
       0.672
AMP99792.1
Hypothetical protein.
       0.672
AMP99788.1
Plasmid transfer protein.
       0.669
AMP99789.1
Hypothetical protein.
       0.669
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.