STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ00574.1G-D-S-L family lipolytic protein. (439 aa)    
Predicted Functional Partners:
AMQ00575.1
Long-chain fatty acid transporter; Pfam:pfam03349 Outer membrane protein transport protein (OMPP1/FadL/TodX).
 
     0.947
AMQ00994.1
Membrane protein.
  
     0.531
AMP99669.1
Cellulase; Pfam:pfam00759 Glycosyl hydrolase family 9.
 
 
 0.478
AMQ00576.1
Nitroreductase; Pfam:pfam00881 Nitroreductase family.
       0.463
AMP98671.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobB.
  
     0.461
AMP98765.1
Hypothetical protein.
  
 
   0.414
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.