STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01116.1Chemotaxis protein CheR; Pfam:pfam01739 CheR methyltransferase, SAM binding domain. (275 aa)    
Predicted Functional Partners:
AMQ01117.1
Chemotaxis protein CheB; Pfam:pfam01339 CheB methylesterase.
  
 0.982
AMQ01114.1
Histidine kinase; Pfam:pfam05227 CHASE3 domain.
  
 0.971
AMQ01113.1
Hybrid sensor histidine kinase/response regulator; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.948
AMQ00506.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.938
AMQ01115.1
Histidine kinase; Pfam:pfam00072 Response regulator receiver domain.
 
     0.907
AMP99246.1
Chemotaxis response regulator protein-glutamate methylesterase CheB; Pfam:pfam01339 CheB methylesterase.
  
 0.875
AMQ01118.1
Pfam:pfam00072 Response regulator receiver domain.
 
     0.858
AMQ01112.1
Metalloprotease; Pfam:pfam04228 Putative neutral zinc metallopeptidase.
       0.754
AMQ00508.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.699
AMP97912.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.682
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.