STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01259.1Capsular exopolysaccharide family; Pfam:pfam13614 AAA domain. (800 aa)    
Predicted Functional Partners:
AMQ01260.1
Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
 
 
 0.994
AMP99037.1
Tyrosine-protein kinase; Pfam:pfam13614 AAA domain.
 
 
0.942
AMP99038.1
Putative EPS related membrane protein; Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
 
 
 0.934
AMP97160.1
Glycosyltransferase; Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.893
AMQ01373.1
Capsule biosynthesis protein; Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
  
 
 0.890
AMP99021.1
EPS related membrane protein; Pfam:pfam02397 Bacterial sugar transferase.
 
  
 0.875
AMQ01258.1
Pfam:pfam02357 Transcription termination factor nusG.
 
   
 0.822
AMQ01395.1
Pfam:pfam02719 Polysaccharide biosynthesis protein.
 
  
 0.785
AMP99039.1
Capsular polysaccharide biosynthesis protein.
 
  
 0.780
AMQ01380.1
UDP-glucose 4-epimerase; Pfam:pfam02719 Polysaccharide biosynthesis protein.
  
  
 0.751
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.