STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01367.1Hypothetical protein; Pfam:pfam13560 Helix-turn-helix domain. (112 aa)    
Predicted Functional Partners:
AMQ01341.1
Beta-carotene 15,15'-monooxygenase.
  
     0.672
AMQ00776.1
Transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
     0.651
AMP99894.1
Orotate phosphoribosyltransferase.
  
     0.603
AMQ00664.1
Hypothetical protein; Pfam:pfam14093 Domain of unknown function (DUF4271).
  
     0.565
AMP99456.1
Hypothetical protein.
  
     0.555
AMQ01814.1
Pfam:pfam13568 Outer membrane protein beta-barrel domain.
  
     0.549
AMP98129.1
Hypothetical protein; Pfam:pfam13454 FAD-NAD(P)-binding.
  
     0.535
AMQ01801.1
Hypothetical protein.
  
     0.531
AMQ01883.1
Hypothetical protein.
  
     0.529
AMQ00995.1
Pfam:pfam11276 Protein of unknown function (DUF3078).
  
    0.522
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.