STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01544.1Pfam:pfam00173 Cytochrome b5-like Heme/Steroid binding domain. (79 aa)    
Predicted Functional Partners:
AMQ01543.1
Hypothetical protein.
       0.795
AMQ01542.1
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.674
AMQ01883.1
Hypothetical protein.
  
     0.633
AMP97065.1
ABC transporter permease.
  
     0.537
AMP97009.1
Histone H1-like protein.
  
     0.524
AMP97625.1
Pfam:pfam00849 RNA pseudouridylate synthase.
  
     0.516
AMP97768.1
Histone H1-like protein.
  
     0.506
AMP97502.1
Histone H1.
  
     0.501
AMP98639.1
Anti-anti-sigma factor.
  
     0.495
AMP98595.1
Hypothetical protein.
  
     0.492
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.