STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01620.1Phospholipase; Pfam:pfam12695 Alpha/beta hydrolase family. (260 aa)    
Predicted Functional Partners:
AMQ01625.1
Hypothetical protein; Pfam:pfam10091 Putative glucoamylase.
 
     0.744
AMQ01623.1
Beta-D-glucoside glucohydrolase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
     0.661
AMQ01624.1
Xylosidase; Pfam:pfam04616 Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.661
AMQ01621.1
Membrane protein; Pfam:pfam07980 SusD family.
       0.563
AMQ01622.1
Membrane protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
       0.534
AMP99317.1
Endonuclease; Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
 
     0.460
AMP98446.1
Lipase; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
 
     0.438
AMQ01628.1
Transcriptional regulator; Pfam:pfam07495 Y_Y_Y domain.
 
     0.423
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.