STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01624.1Xylosidase; Pfam:pfam04616 Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (580 aa)    
Predicted Functional Partners:
AMQ01625.1
Hypothetical protein; Pfam:pfam10091 Putative glucoamylase.
 
     0.939
AMP99867.1
Xylan 1,4-beta-xylosidase; Pfam:pfam04616 Glycosyl hydrolases family 43.
     
  0.900
AMQ01626.1
Glycan metabolism protein RagB; Pfam:pfam07980 SusD family.
 
     0.848
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.821
AMQ01627.1
Membrane protein; Pfam:pfam13715 Domain of unknown function (DUF4480).
 
     0.812
uxaC
Pfam:pfam02614 Glucuronate isomerase.
    
 0.805
uxaC-2
Pfam:pfam02614 Glucuronate isomerase.
    
 0.805
AMQ01623.1
Beta-D-glucoside glucohydrolase; Pfam:pfam00933 Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.803
AMQ01620.1
Phospholipase; Pfam:pfam12695 Alpha/beta hydrolase family.
 
     0.715
AMQ01621.1
Membrane protein; Pfam:pfam07980 SusD family.
 
     0.457
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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