STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMQ01724.1Hypothetical protein; Pfam:pfam00589 Phage integrase family. (407 aa)    
Predicted Functional Partners:
AMP97897.1
Tyrosine recombinase.
  
     0.720
AMP98662.1
Recombinase.
  
     0.711
AMP97420.1
Integrase.
  
     0.708
AMP97895.1
Site-specific recombinase; Pfam:pfam00589 Phage integrase family.
  
     0.705
AMP98250.1
Site-specific recombinase.
  
     0.646
AMP98664.1
Site-specific recombinase; Pfam:pfam00589 Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.610
AMP97418.1
Site-specific recombinase; Pfam:pfam00589 Phage integrase family.
  
     0.568
AMQ01723.1
Hypothetical protein.
       0.488
AMP97406.1
Relaxase; Pfam:pfam03432 Relaxase/Mobilisation nuclease domain.
  
     0.480
AMQ01416.1
Amidophosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
   
    0.422
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.