Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMQ01895.1ABC transporter; Pfam:pfam12704 MacB-like periplasmic core domain. (410 aa)    
Predicted Functional Partners:
AMP97593.1
Macrolide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 0.983
AMP97201.1
Phosphonate ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 0.972
AMP97205.1
ABC transporter, ATPase subunit; Pfam:pfam00005 ABC transporter.
 
 0.971
AMP99914.1
Pfam:pfam00005 ABC transporter.
 
 0.937
lolD
Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.935
AMP99190.1
Pfam:pfam00005 ABC transporter.
 
 0.930
AMQ00432.1
Transporter; Pfam:pfam00529 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.832
AMP97084.1
Phosphonate ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
    
 0.743
AMP98453.1
Organic solvent ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
      0.710
AMQ01896.1
[Fe-S]-binding protein; Pfam:pfam01521 Iron-sulphur cluster biosynthesis; Belongs to the HesB/IscA family.
       0.611
Your Current Organism:
Pedobacter cryoconitis
NCBI taxonomy Id: 188932
Other names: DSM 14825, LMG 21415, LMG:21415, P. cryoconitis, Pedobacter cryoconitis Margesin et al. 2003
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