Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0007Conserved hypothetical protein. (364 aa)    
Predicted Functional Partners:
traB
TraB family protein.
     
 0.736
rps2
Ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.
 
 
 0.711
rpl39e
Ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.
  
 
   0.656
MA_1736
Mov34 family protein.
 
 
 0.650
MA_1381
GTP-binding protein.
 
 0.648
rpl6
Ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
   0.644
rps11
Ribosomal protein S11p; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.641
rps15
Ribosomal protein S15p.
  
   0.636
rps9
Ribosomal protein S9p; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.635
rpl7ae
Ribosomal protein L7ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 
 0.635
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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