Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0079Hypothetical protein (multi-domain). (845 aa)    
Predicted Functional Partners:
MA_0078
Predicted protein.
 
     0.856
MA_3260
O-GlcNAc transferase, p110 subunit.
 
   
 0.671
MA_3254
O-GlcNAc transferase, p110 subunit.
 
   
 0.668
MA_1519
WD-domain containing protein.
 
 
 0.615
icaA
Glucosaminyltransferase.
  
 
 0.612
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.599
alaXM
alanyl-tRNA synthetase domain protein; Functions in trans to edit the amino acid moiety from mischarged charged tRNA(Ala).
  
 0.599
MA_2525
WD40-repeat containing protein.
 
 
 0.599
MA_2580
WD-domain containing protein.
 
 
 0.590
MA_0088
DnaJ protein.
  
 0.587
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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