Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gnoGluconate 5-dehydrogenase. (255 aa)    
Predicted Functional Partners:
MA_1661
Peptidylprolyl isomerase.
 
 
 0.732
MA_4042
acetyl-CoA C-acyltransferase.
  
 
 0.729
MA_0108
Glyoxalase.
 
 
 0.685
fpoC
F(420)H(2) dehydrogenase, subunit FpoC.
 
 
 0.590
fpoI
F(420)H(2) dehydrogenase, subunit FpoI.
 
 
 
 0.568
MA_1160
Predicted protein.
  
 
 0.555
mre11
DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family.
  
 
 0.555
MA_2363
Phosphoesterase.
  
 
 0.555
MA_4507
DNA helicase RecQ.
   
 
 0.529
fpoM
F(420)H(2) dehydrogenase, subunit FpoM.
  
 
 0.513
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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