Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MA_0161Ferritin. (167 aa)    
Predicted Functional Partners:
MA_3737
Desulfoferrodoxin.
 
  
 0.948
ahpC
Peroxiredoxin (alkyl hydroperoxide reductase); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.880
MA_2221
Conserved hypothetical protein.
  
    0.832
MA_3968
Conserved hypothetical protein.
  
    0.832
cmd
Carboxymuconolactone decarboxylase.
  
    0.815
cmd-2
Carboxymuconolactone decarboxylase.
  
    0.815
fprA
Flavoprotein.
 
  
 0.725
rpl10e
Ribosomal protein L10e; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.702
MA_0162
Universal stress protein.
     
 0.652
rpl29
Ribosomal protein L29p; Belongs to the universal ribosomal protein uL29 family.
   
   0.635
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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