Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MA_0240Conserved hypothetical protein. (281 aa)    
Predicted Functional Partners:
MA_0428
AIR carboxylase.
 
  
 0.978
MA_0429
Conserved hypothetical protein; Belongs to the LarC family.
  
 0.931
bioB
Biotin synthase; Catalyzes the isomerization of L-lysine to (2R,3R)-3- methylornithine via a radical-based mechanism (Probable). Is required for the biosynthesis of pyrrolysine; Belongs to the radical SAM superfamily. PylB family.
  
    0.893
MA_0239
Acetyltransferase (GNAT) family protein.
       0.865
MA_0238
Conserved hypothetical protein.
       0.864
MA_1312
Conserved hypothetical protein.
 
  
 0.835
MA_1313
Conserved hypothetical protein.
 
  
 0.832
MA_0369
Conserved hypothetical protein.
 
  
 0.779
MA_4023
Cobalamin biosynthesis protein.
 
    0.686
cbiM
Cobalamin biosynthesis protein; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
    0.594
Your Current Organism:
Methanosarcina acetivorans
NCBI taxonomy Id: 188937
Other names: M. acetivorans C2A, Methanosarcina acetivorans C2A, Methanosarcina acetivorans str. C2A
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